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dc.contributor.authorRainer J
dc.contributor.authorGatto L
dc.contributor.authorWeichenberger CX
dc.date.accessioned2019-11-08T11:01:11Z
dc.date.available2019-11-08T11:01:11Z
dc.date.issued2019
dc.identifier.issn1367-4811
dc.identifier.urihttp://dx.doi.org/10.1093/bioinformatics/btz031
dc.identifier.urihttps://bia.unibz.it/handle/10863/11210
dc.description.abstractBioinformatics research frequently involves handling gene-centric data such as exons, transcripts, proteins, and their positions relative to a reference coordinate system. The ensembldb Bioconductor package retrieves and stores Ensembl-based genetic annotations and positional information, and furthermore offers identifier conversion and coordinate mappings for gene-associated data. In support of reproducible research, data are tied to Ensembl releases and are kept separately from the software. Premade data packages are available for a variety of genomes and Ensembl releases. Three examples demonstrate typical use cases of this software. ensembldb is part of Bioconductor (https://bioconductor.org/packages/ensembldb). Supplementary Data are available at Bioinformatics Online. Summary Availability Supplementary Informationen_US
dc.languageEnglish
dc.language.isoenen_US
dc.relation
dc.rightsThis is an Open Access article distributed under the terms of the Creative Commons Attribution License
dc.titleensembldb: an R package to create and use Ensembl-based annotation resourcesen_US
dc.typeArticleen_US
dc.date.updated2019-11-08T10:53:06Z
dc.language.isiEN-GB
dc.journal.titleBioinformatics (Oxford, England)
dc.description.fulltextopenen_US


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